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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        Tool Citations

        Please remember to cite the tools that you use in your analysis.

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        About MultiQC

        This report was generated using MultiQC, version 1.27.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-04-01, 13:23 MSK based on data in: /data12/bio/MGX_DATA/multiqc/stat

        General Statistics

        Showing 97/97 rows and 1/5 columns.
        Sample NameMedian lengthRead N50Median Qual# Reads (K)Total Bases (Mb)
        b1_1_1
        1494bp
        1494bp
        12.1
        7.5K
        11.1Mb
        b1_1_2
        1496bp
        1497bp
        12.2
        5.5K
        8.2Mb
        b1_1_3
        1486bp
        1487bp
        12.1
        3.7K
        5.4Mb
        b1_1_6
        1494bp
        1494bp
        12.2
        6.9K
        10.3Mb
        b1_1_7
        1482bp
        1483bp
        12.1
        4.4K
        6.4Mb
        b1_4_1
        1487bp
        1487bp
        12.1
        8.6K
        12.8Mb
        b1_4_2
        1482bp
        1482bp
        12.2
        6.4K
        9.4Mb
        b1_4_3
        1478bp
        1478bp
        12.2
        7.6K
        11.2Mb
        b1_4_6
        1478bp
        1479bp
        12.2
        4.1K
        6.0Mb
        b1_4_7
        1491bp
        1492bp
        12.2
        4.5K
        6.7Mb
        b1_8_1
        1497bp
        1498bp
        12.2
        4.5K
        6.7Mb
        b1_8_2
        1473bp
        1474bp
        12.1
        2.0K
        2.9Mb
        b1_8_3
        1477bp
        1478bp
        12.1
        4.0K
        5.8Mb
        b1_8_6
        1487bp
        1488bp
        12.2
        6.4K
        9.5Mb
        b1_8_7
        1487bp
        1488bp
        12.2
        4.2K
        6.2Mb
        b1_11_1
        1501bp
        1502bp
        12.2
        4.8K
        7.2Mb
        b1_11_2
        1495bp
        1496bp
        12.2
        4.0K
        5.9Mb
        b1_11_3
        1491bp
        1491bp
        12.1
        6.8K
        10.2Mb
        b1_11_6
        1500bp
        1501bp
        12.1
        6.5K
        9.7Mb
        b1_11_7
        1496bp
        1498bp
        12.1
        3.3K
        4.8Mb
        b1_15_1
        1497bp
        1498bp
        12.2
        5.2K
        7.7Mb
        b1_15_2
        1477bp
        1478bp
        12.1
        5.3K
        7.8Mb
        b1_15_3
        1493bp
        1494bp
        12.1
        5.9K
        8.7Mb
        b1_15_6
        1493bp
        1493bp
        12.1
        6.1K
        9.1Mb
        b1_15_7
        1476bp
        1476bp
        12.1
        5.9K
        8.7Mb
        b1_18_1
        1498bp
        1499bp
        12.1
        6.2K
        9.3Mb
        b1_18_2
        1477bp
        1478bp
        12.1
        5.9K
        8.6Mb
        b1_18_3
        1482bp
        1483bp
        12.1
        5.4K
        7.9Mb
        b1_18_6
        1491bp
        1492bp
        12.2
        5.4K
        8.0Mb
        b1_18_7
        1474bp
        1475bp
        12.0
        3.7K
        5.5Mb
        b1_22_1
        1503bp
        1504bp
        12.1
        7.1K
        10.5Mb
        b1_22_2
        1469bp
        1470bp
        12.0
        3.1K
        4.5Mb
        b1_22_3
        1484bp
        1485bp
        12.1
        5.2K
        7.6Mb
        b1_22_6
        1499bp
        1500bp
        12.2
        6.0K
        8.9Mb
        b1_22_7
        1482bp
        1483bp
        12.2
        6.8K
        10.0Mb
        b2_1_1
        1481bp
        1482bp
        11.8
        17.1K
        25.3Mb
        b2_1_2
        1460bp
        1461bp
        11.8
        15.3K
        22.2Mb
        b2_1_3
        1470bp
        1471bp
        11.8
        20.6K
        30.1Mb
        b2_1_4
        1476bp
        1477bp
        11.8
        26.8K
        39.4Mb
        b2_1_5
        1472bp
        1473bp
        11.8
        24.1K
        35.2Mb
        b2_4_1
        1473bp
        1473bp
        11.8
        23.7K
        34.8Mb
        b2_4_2
        1474bp
        1474bp
        11.8
        19.5K
        28.6Mb
        b2_4_3
        1475bp
        1475bp
        11.8
        20.3K
        29.9Mb
        b2_4_4
        1470bp
        1471bp
        11.8
        17.9K
        26.2Mb
        b2_4_5
        1484bp
        1485bp
        11.8
        29.2K
        43.1Mb
        b2_8_1
        1482bp
        1483bp
        11.8
        24.5K
        36.2Mb
        b2_8_2
        1483bp
        1484bp
        11.8
        14.6K
        21.6Mb
        b2_8_3
        1488bp
        1488bp
        11.9
        19.5K
        28.8Mb
        b2_8_4
        1484bp
        1485bp
        11.8
        20.3K
        30.0Mb
        b2_8_5
        1478bp
        1479bp
        11.8
        14.0K
        20.6Mb
        b2_11_1
        1467bp
        1468bp
        11.8
        6.8K
        10.0Mb
        b2_11_2
        1476bp
        1477bp
        11.8
        19.3K
        28.4Mb
        b2_11_3
        1477bp
        1477bp
        11.8
        26.3K
        38.6Mb
        b2_11_4
        1477bp
        1477bp
        11.8
        21.2K
        31.2Mb
        b2_11_5
        1474bp
        1475bp
        11.8
        22.1K
        32.4Mb
        b2_15_1
        1471bp
        1472bp
        11.8
        23.0K
        33.6Mb
        b2_15_2
        1464bp
        1465bp
        11.7
        18.9K
        27.5Mb
        b2_15_3
        1461bp
        1462bp
        11.9
        12.9K
        18.8Mb
        b2_15_4
        1476bp
        1477bp
        11.8
        16.9K
        24.9Mb
        b2_15_5
        1475bp
        1475bp
        11.8
        15.3K
        22.5Mb
        b2_18_1
        1471bp
        1472bp
        11.8
        22.8K
        33.3Mb
        b2_18_2
        1471bp
        1472bp
        11.8
        22.1K
        32.3Mb
        b2_18_3
        1466bp
        1467bp
        11.8
        17.5K
        25.6Mb
        b2_18_4
        1474bp
        1474bp
        11.8
        21.0K
        30.7Mb
        b2_18_5
        1463bp
        1463bp
        11.8
        23.1K
        33.6Mb
        b2_22_1
        1475bp
        1476bp
        11.8
        16.6K
        24.2Mb
        b2_22_2
        1473bp
        1474bp
        11.9
        3.7K
        5.5Mb
        b2_22_3
        1465bp
        1466bp
        11.8
        13.1K
        19.1Mb
        b2_22_4
        1473bp
        1474bp
        11.8
        20.1K
        29.3Mb
        b2_22_5
        1475bp
        1475bp
        11.8
        24.2K
        35.6Mb
        b3_15_1
        1477bp
        1478bp
        15.7
        12.8K
        18.8Mb
        b3_15_2
        1483bp
        1483bp
        15.7
        37.8K
        55.8Mb
        b3_15_3
        1480bp
        1480bp
        15.7
        28.6K
        42.1Mb
        b3_15_4
        1479bp
        1479bp
        15.7
        38.1K
        56.1Mb
        b3_18_1
        1482bp
        1482bp
        15.7
        25.5K
        37.7Mb
        b3_18_2
        1480bp
        1481bp
        15.7
        21.1K
        31.1Mb
        b3_18_3
        1480bp
        1481bp
        15.7
        25.3K
        37.3Mb
        b3_18_4
        1478bp
        1478bp
        15.7
        31.2K
        45.9Mb
        b3_22_1
        1485bp
        1485bp
        15.7
        27.6K
        40.8Mb
        b3_22_2
        1477bp
        1478bp
        15.7
        30.6K
        44.9Mb
        b3_22_3
        1473bp
        1474bp
        15.8
        22.3K
        32.8Mb
        b3_22_4
        1483bp
        1483bp
        15.7
        12.5K
        18.5Mb
        b3_25_1
        1477bp
        1477bp
        15.7
        26.3K
        38.7Mb
        b3_25_2
        1482bp
        1483bp
        15.8
        27.8K
        41.1Mb
        b3_25_3
        1481bp
        1482bp
        15.7
        30.2K
        44.5Mb
        b3_25_4
        1474bp
        1474bp
        15.8
        24.5K
        36.0Mb
        b3_29_1
        1479bp
        1479bp
        15.8
        25.0K
        36.9Mb
        b3_29_2
        1483bp
        1483bp
        15.7
        27.6K
        40.8Mb
        b3_29_3
        1483bp
        1483bp
        15.8
        40.3K
        59.5Mb
        b3_29_4
        1483bp
        1483bp
        15.7
        19.8K
        29.3Mb
        b3_32_2
        1477bp
        1477bp
        15.7
        17.6K
        25.9Mb
        b3_32_3
        1482bp
        1482bp
        15.8
        21.9K
        32.3Mb
        b3_32_4
        1481bp
        1482bp
        15.8
        18.8K
        27.8Mb
        b3_36_1
        1480bp
        1481bp
        15.8
        19.6K
        28.9Mb
        b3_36_2
        1482bp
        1482bp
        15.8
        24.1K
        35.6Mb
        b3_36_3
        1478bp
        1478bp
        15.7
        61.2K
        90.1Mb
        b3_36_4
        1480bp
        1480bp
        15.7
        25.6K
        37.7Mb

        NanoStat

        Reports various statistics for long read dataset in FASTQ, BAM, or albacore sequencing summary format (supports NanoPack; NanoPlot, NanoComp).URL: https://github.com/wdecoster/nanostat; https://github.com/wdecoster/nanoplotDOI: 10.1093/bioinformatics/bty149

        Programs are part of the NanoPack family for summarising results of sequencing on Oxford Nanopore methods (MinION, PromethION etc.)

        Summary Statistics (FASTQ)

        Showing 97/97 rows and 5/7 columns.
        Sample NameMedian lengthMean lengthRead N50Median QualMean Qual# Reads (K)Total Bases (Mb)
        b1_1_1
        1494bp
        1486bp
        1494bp
        12.1
        11.6
        7.5K
        11.1Mb
        b1_1_2
        1496bp
        1484bp
        1497bp
        12.2
        11.6
        5.5K
        8.2Mb
        b1_1_3
        1486bp
        1475bp
        1487bp
        12.1
        11.6
        3.7K
        5.4Mb
        b1_1_6
        1494bp
        1488bp
        1494bp
        12.2
        11.6
        6.9K
        10.3Mb
        b1_1_7
        1482bp
        1470bp
        1483bp
        12.1
        11.6
        4.4K
        6.4Mb
        b1_4_1
        1487bp
        1481bp
        1487bp
        12.1
        11.6
        8.6K
        12.8Mb
        b1_4_2
        1482bp
        1474bp
        1482bp
        12.2
        11.7
        6.4K
        9.4Mb
        b1_4_3
        1478bp
        1474bp
        1478bp
        12.2
        11.6
        7.6K
        11.2Mb
        b1_4_6
        1478bp
        1465bp
        1479bp
        12.2
        11.7
        4.1K
        6.0Mb
        b1_4_7
        1491bp
        1481bp
        1492bp
        12.2
        11.7
        4.5K
        6.7Mb
        b1_8_1
        1497bp
        1485bp
        1498bp
        12.2
        11.6
        4.5K
        6.7Mb
        b1_8_2
        1473bp
        1454bp
        1474bp
        12.1
        11.6
        2.0K
        2.9Mb
        b1_8_3
        1477bp
        1466bp
        1478bp
        12.1
        11.6
        4.0K
        5.8Mb
        b1_8_6
        1487bp
        1479bp
        1488bp
        12.2
        11.6
        6.4K
        9.5Mb
        b1_8_7
        1487bp
        1476bp
        1488bp
        12.2
        11.6
        4.2K
        6.2Mb
        b1_11_1
        1501bp
        1490bp
        1502bp
        12.2
        11.6
        4.8K
        7.2Mb
        b1_11_2
        1495bp
        1477bp
        1496bp
        12.2
        11.6
        4.0K
        5.9Mb
        b1_11_3
        1491bp
        1484bp
        1491bp
        12.1
        11.6
        6.8K
        10.2Mb
        b1_11_6
        1500bp
        1491bp
        1501bp
        12.1
        11.6
        6.5K
        9.7Mb
        b1_11_7
        1496bp
        1477bp
        1498bp
        12.1
        11.6
        3.3K
        4.8Mb
        b1_15_1
        1497bp
        1490bp
        1498bp
        12.2
        11.6
        5.2K
        7.7Mb
        b1_15_2
        1477bp
        1468bp
        1478bp
        12.1
        11.6
        5.3K
        7.8Mb
        b1_15_3
        1493bp
        1486bp
        1494bp
        12.1
        11.6
        5.9K
        8.7Mb
        b1_15_6
        1493bp
        1483bp
        1493bp
        12.1
        11.6
        6.1K
        9.1Mb
        b1_15_7
        1476bp
        1470bp
        1476bp
        12.1
        11.6
        5.9K
        8.7Mb
        b1_18_1
        1498bp
        1490bp
        1499bp
        12.1
        11.6
        6.2K
        9.3Mb
        b1_18_2
        1477bp
        1468bp
        1478bp
        12.1
        11.6
        5.9K
        8.6Mb
        b1_18_3
        1482bp
        1476bp
        1483bp
        12.1
        11.6
        5.4K
        7.9Mb
        b1_18_6
        1491bp
        1483bp
        1492bp
        12.2
        11.6
        5.4K
        8.0Mb
        b1_18_7
        1474bp
        1462bp
        1475bp
        12.0
        11.5
        3.7K
        5.5Mb
        b1_22_1
        1503bp
        1490bp
        1504bp
        12.1
        11.6
        7.1K
        10.5Mb
        b1_22_2
        1469bp
        1453bp
        1470bp
        12.0
        11.5
        3.1K
        4.5Mb
        b1_22_3
        1484bp
        1478bp
        1485bp
        12.1
        11.6
        5.2K
        7.6Mb
        b1_22_6
        1499bp
        1488bp
        1500bp
        12.2
        11.6
        6.0K
        8.9Mb
        b1_22_7
        1482bp
        1475bp
        1483bp
        12.2
        11.6
        6.8K
        10.0Mb
        b2_1_1
        1481bp
        1476bp
        1482bp
        11.8
        11.3
        17.1K
        25.3Mb
        b2_1_2
        1460bp
        1454bp
        1461bp
        11.8
        11.3
        15.3K
        22.2Mb
        b2_1_3
        1470bp
        1466bp
        1471bp
        11.8
        11.3
        20.6K
        30.1Mb
        b2_1_4
        1476bp
        1471bp
        1477bp
        11.8
        11.3
        26.8K
        39.4Mb
        b2_1_5
        1472bp
        1465bp
        1473bp
        11.8
        11.3
        24.1K
        35.2Mb
        b2_4_1
        1473bp
        1468bp
        1473bp
        11.8
        11.3
        23.7K
        34.8Mb
        b2_4_2
        1474bp
        1468bp
        1474bp
        11.8
        11.3
        19.5K
        28.6Mb
        b2_4_3
        1475bp
        1470bp
        1475bp
        11.8
        11.3
        20.3K
        29.9Mb
        b2_4_4
        1470bp
        1464bp
        1471bp
        11.8
        11.3
        17.9K
        26.2Mb
        b2_4_5
        1484bp
        1480bp
        1485bp
        11.8
        11.3
        29.2K
        43.1Mb
        b2_8_1
        1482bp
        1476bp
        1483bp
        11.8
        11.3
        24.5K
        36.2Mb
        b2_8_2
        1483bp
        1475bp
        1484bp
        11.8
        11.3
        14.6K
        21.6Mb
        b2_8_3
        1488bp
        1477bp
        1488bp
        11.9
        11.4
        19.5K
        28.8Mb
        b2_8_4
        1484bp
        1478bp
        1485bp
        11.8
        11.3
        20.3K
        30.0Mb
        b2_8_5
        1478bp
        1469bp
        1479bp
        11.8
        11.3
        14.0K
        20.6Mb
        b2_11_1
        1467bp
        1461bp
        1468bp
        11.8
        11.3
        6.8K
        10.0Mb
        b2_11_2
        1476bp
        1472bp
        1477bp
        11.8
        11.3
        19.3K
        28.4Mb
        b2_11_3
        1477bp
        1466bp
        1477bp
        11.8
        11.3
        26.3K
        38.6Mb
        b2_11_4
        1477bp
        1470bp
        1477bp
        11.8
        11.3
        21.2K
        31.2Mb
        b2_11_5
        1474bp
        1469bp
        1475bp
        11.8
        11.3
        22.1K
        32.4Mb
        b2_15_1
        1471bp
        1464bp
        1472bp
        11.8
        11.3
        23.0K
        33.6Mb
        b2_15_2
        1464bp
        1458bp
        1465bp
        11.7
        11.3
        18.9K
        27.5Mb
        b2_15_3
        1461bp
        1453bp
        1462bp
        11.9
        11.4
        12.9K
        18.8Mb
        b2_15_4
        1476bp
        1470bp
        1477bp
        11.8
        11.3
        16.9K
        24.9Mb
        b2_15_5
        1475bp
        1469bp
        1475bp
        11.8
        11.3
        15.3K
        22.5Mb
        b2_18_1
        1471bp
        1463bp
        1472bp
        11.8
        11.3
        22.8K
        33.3Mb
        b2_18_2
        1471bp
        1464bp
        1472bp
        11.8
        11.3
        22.1K
        32.3Mb
        b2_18_3
        1466bp
        1461bp
        1467bp
        11.8
        11.3
        17.5K
        25.6Mb
        b2_18_4
        1474bp
        1467bp
        1474bp
        11.8
        11.3
        21.0K
        30.7Mb
        b2_18_5
        1463bp
        1456bp
        1463bp
        11.8
        11.4
        23.1K
        33.6Mb
        b2_22_1
        1475bp
        1459bp
        1476bp
        11.8
        11.3
        16.6K
        24.2Mb
        b2_22_2
        1473bp
        1467bp
        1474bp
        11.9
        11.4
        3.7K
        5.5Mb
        b2_22_3
        1465bp
        1461bp
        1466bp
        11.8
        11.3
        13.1K
        19.1Mb
        b2_22_4
        1473bp
        1457bp
        1474bp
        11.8
        11.3
        20.1K
        29.3Mb
        b2_22_5
        1475bp
        1471bp
        1475bp
        11.8
        11.3
        24.2K
        35.6Mb
        b3_15_1
        1477bp
        1470bp
        1478bp
        15.7
        14.4
        12.8K
        18.8Mb
        b3_15_2
        1483bp
        1476bp
        1483bp
        15.7
        14.5
        37.8K
        55.8Mb
        b3_15_3
        1480bp
        1474bp
        1480bp
        15.7
        14.5
        28.6K
        42.1Mb
        b3_15_4
        1479bp
        1473bp
        1479bp
        15.7
        14.5
        38.1K
        56.1Mb
        b3_18_1
        1482bp
        1476bp
        1482bp
        15.7
        14.5
        25.5K
        37.7Mb
        b3_18_2
        1480bp
        1475bp
        1481bp
        15.7
        14.5
        21.1K
        31.1Mb
        b3_18_3
        1480bp
        1474bp
        1481bp
        15.7
        14.5
        25.3K
        37.3Mb
        b3_18_4
        1478bp
        1472bp
        1478bp
        15.7
        14.4
        31.2K
        45.9Mb
        b3_22_1
        1485bp
        1479bp
        1485bp
        15.7
        14.5
        27.6K
        40.8Mb
        b3_22_2
        1477bp
        1468bp
        1478bp
        15.7
        14.5
        30.6K
        44.9Mb
        b3_22_3
        1473bp
        1469bp
        1474bp
        15.8
        14.5
        22.3K
        32.8Mb
        b3_22_4
        1483bp
        1477bp
        1483bp
        15.7
        14.5
        12.5K
        18.5Mb
        b3_25_1
        1477bp
        1471bp
        1477bp
        15.7
        14.5
        26.3K
        38.7Mb
        b3_25_2
        1482bp
        1477bp
        1483bp
        15.8
        14.5
        27.8K
        41.1Mb
        b3_25_3
        1481bp
        1474bp
        1482bp
        15.7
        14.5
        30.2K
        44.5Mb
        b3_25_4
        1474bp
        1470bp
        1474bp
        15.8
        14.6
        24.5K
        36.0Mb
        b3_29_1
        1479bp
        1474bp
        1479bp
        15.8
        14.5
        25.0K
        36.9Mb
        b3_29_2
        1483bp
        1478bp
        1483bp
        15.7
        14.5
        27.6K
        40.8Mb
        b3_29_3
        1483bp
        1477bp
        1483bp
        15.8
        14.5
        40.3K
        59.5Mb
        b3_29_4
        1483bp
        1480bp
        1483bp
        15.7
        14.5
        19.8K
        29.3Mb
        b3_32_2
        1477bp
        1471bp
        1477bp
        15.7
        14.5
        17.6K
        25.9Mb
        b3_32_3
        1482bp
        1475bp
        1482bp
        15.8
        14.5
        21.9K
        32.3Mb
        b3_32_4
        1481bp
        1477bp
        1482bp
        15.8
        14.5
        18.8K
        27.8Mb
        b3_36_1
        1480bp
        1475bp
        1481bp
        15.8
        14.5
        19.6K
        28.9Mb
        b3_36_2
        1482bp
        1478bp
        1482bp
        15.8
        14.6
        24.1K
        35.6Mb
        b3_36_3
        1478bp
        1472bp
        1478bp
        15.7
        14.5
        61.2K
        90.1Mb
        b3_36_4
        1480bp
        1472bp
        1480bp
        15.7
        14.4
        25.6K
        37.7Mb

        Reads by quality

        Read counts categorised by read quality (Phred score).

        Sequencing machines assign each generated read a quality score using the Phred scale. The phred score represents the liklelyhood that a given read contains errors. High quality reads have a high score.

        Created with MultiQC