A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-04-01, 13:23 MSK
based on data in:
/data12/bio/MGX_DATA/multiqc/stat
General Statistics
Showing 97/97 rows and 1/5 columns.
| Sample Name | Median length | Read N50 | Median Qual | # Reads (K) | Total Bases (Mb) |
|---|---|---|---|---|---|
| b1_1_1 | 1494bp | 1494bp | 12.1 | 7.5K | 11.1Mb |
| b1_1_2 | 1496bp | 1497bp | 12.2 | 5.5K | 8.2Mb |
| b1_1_3 | 1486bp | 1487bp | 12.1 | 3.7K | 5.4Mb |
| b1_1_6 | 1494bp | 1494bp | 12.2 | 6.9K | 10.3Mb |
| b1_1_7 | 1482bp | 1483bp | 12.1 | 4.4K | 6.4Mb |
| b1_4_1 | 1487bp | 1487bp | 12.1 | 8.6K | 12.8Mb |
| b1_4_2 | 1482bp | 1482bp | 12.2 | 6.4K | 9.4Mb |
| b1_4_3 | 1478bp | 1478bp | 12.2 | 7.6K | 11.2Mb |
| b1_4_6 | 1478bp | 1479bp | 12.2 | 4.1K | 6.0Mb |
| b1_4_7 | 1491bp | 1492bp | 12.2 | 4.5K | 6.7Mb |
| b1_8_1 | 1497bp | 1498bp | 12.2 | 4.5K | 6.7Mb |
| b1_8_2 | 1473bp | 1474bp | 12.1 | 2.0K | 2.9Mb |
| b1_8_3 | 1477bp | 1478bp | 12.1 | 4.0K | 5.8Mb |
| b1_8_6 | 1487bp | 1488bp | 12.2 | 6.4K | 9.5Mb |
| b1_8_7 | 1487bp | 1488bp | 12.2 | 4.2K | 6.2Mb |
| b1_11_1 | 1501bp | 1502bp | 12.2 | 4.8K | 7.2Mb |
| b1_11_2 | 1495bp | 1496bp | 12.2 | 4.0K | 5.9Mb |
| b1_11_3 | 1491bp | 1491bp | 12.1 | 6.8K | 10.2Mb |
| b1_11_6 | 1500bp | 1501bp | 12.1 | 6.5K | 9.7Mb |
| b1_11_7 | 1496bp | 1498bp | 12.1 | 3.3K | 4.8Mb |
| b1_15_1 | 1497bp | 1498bp | 12.2 | 5.2K | 7.7Mb |
| b1_15_2 | 1477bp | 1478bp | 12.1 | 5.3K | 7.8Mb |
| b1_15_3 | 1493bp | 1494bp | 12.1 | 5.9K | 8.7Mb |
| b1_15_6 | 1493bp | 1493bp | 12.1 | 6.1K | 9.1Mb |
| b1_15_7 | 1476bp | 1476bp | 12.1 | 5.9K | 8.7Mb |
| b1_18_1 | 1498bp | 1499bp | 12.1 | 6.2K | 9.3Mb |
| b1_18_2 | 1477bp | 1478bp | 12.1 | 5.9K | 8.6Mb |
| b1_18_3 | 1482bp | 1483bp | 12.1 | 5.4K | 7.9Mb |
| b1_18_6 | 1491bp | 1492bp | 12.2 | 5.4K | 8.0Mb |
| b1_18_7 | 1474bp | 1475bp | 12.0 | 3.7K | 5.5Mb |
| b1_22_1 | 1503bp | 1504bp | 12.1 | 7.1K | 10.5Mb |
| b1_22_2 | 1469bp | 1470bp | 12.0 | 3.1K | 4.5Mb |
| b1_22_3 | 1484bp | 1485bp | 12.1 | 5.2K | 7.6Mb |
| b1_22_6 | 1499bp | 1500bp | 12.2 | 6.0K | 8.9Mb |
| b1_22_7 | 1482bp | 1483bp | 12.2 | 6.8K | 10.0Mb |
| b2_1_1 | 1481bp | 1482bp | 11.8 | 17.1K | 25.3Mb |
| b2_1_2 | 1460bp | 1461bp | 11.8 | 15.3K | 22.2Mb |
| b2_1_3 | 1470bp | 1471bp | 11.8 | 20.6K | 30.1Mb |
| b2_1_4 | 1476bp | 1477bp | 11.8 | 26.8K | 39.4Mb |
| b2_1_5 | 1472bp | 1473bp | 11.8 | 24.1K | 35.2Mb |
| b2_4_1 | 1473bp | 1473bp | 11.8 | 23.7K | 34.8Mb |
| b2_4_2 | 1474bp | 1474bp | 11.8 | 19.5K | 28.6Mb |
| b2_4_3 | 1475bp | 1475bp | 11.8 | 20.3K | 29.9Mb |
| b2_4_4 | 1470bp | 1471bp | 11.8 | 17.9K | 26.2Mb |
| b2_4_5 | 1484bp | 1485bp | 11.8 | 29.2K | 43.1Mb |
| b2_8_1 | 1482bp | 1483bp | 11.8 | 24.5K | 36.2Mb |
| b2_8_2 | 1483bp | 1484bp | 11.8 | 14.6K | 21.6Mb |
| b2_8_3 | 1488bp | 1488bp | 11.9 | 19.5K | 28.8Mb |
| b2_8_4 | 1484bp | 1485bp | 11.8 | 20.3K | 30.0Mb |
| b2_8_5 | 1478bp | 1479bp | 11.8 | 14.0K | 20.6Mb |
| b2_11_1 | 1467bp | 1468bp | 11.8 | 6.8K | 10.0Mb |
| b2_11_2 | 1476bp | 1477bp | 11.8 | 19.3K | 28.4Mb |
| b2_11_3 | 1477bp | 1477bp | 11.8 | 26.3K | 38.6Mb |
| b2_11_4 | 1477bp | 1477bp | 11.8 | 21.2K | 31.2Mb |
| b2_11_5 | 1474bp | 1475bp | 11.8 | 22.1K | 32.4Mb |
| b2_15_1 | 1471bp | 1472bp | 11.8 | 23.0K | 33.6Mb |
| b2_15_2 | 1464bp | 1465bp | 11.7 | 18.9K | 27.5Mb |
| b2_15_3 | 1461bp | 1462bp | 11.9 | 12.9K | 18.8Mb |
| b2_15_4 | 1476bp | 1477bp | 11.8 | 16.9K | 24.9Mb |
| b2_15_5 | 1475bp | 1475bp | 11.8 | 15.3K | 22.5Mb |
| b2_18_1 | 1471bp | 1472bp | 11.8 | 22.8K | 33.3Mb |
| b2_18_2 | 1471bp | 1472bp | 11.8 | 22.1K | 32.3Mb |
| b2_18_3 | 1466bp | 1467bp | 11.8 | 17.5K | 25.6Mb |
| b2_18_4 | 1474bp | 1474bp | 11.8 | 21.0K | 30.7Mb |
| b2_18_5 | 1463bp | 1463bp | 11.8 | 23.1K | 33.6Mb |
| b2_22_1 | 1475bp | 1476bp | 11.8 | 16.6K | 24.2Mb |
| b2_22_2 | 1473bp | 1474bp | 11.9 | 3.7K | 5.5Mb |
| b2_22_3 | 1465bp | 1466bp | 11.8 | 13.1K | 19.1Mb |
| b2_22_4 | 1473bp | 1474bp | 11.8 | 20.1K | 29.3Mb |
| b2_22_5 | 1475bp | 1475bp | 11.8 | 24.2K | 35.6Mb |
| b3_15_1 | 1477bp | 1478bp | 15.7 | 12.8K | 18.8Mb |
| b3_15_2 | 1483bp | 1483bp | 15.7 | 37.8K | 55.8Mb |
| b3_15_3 | 1480bp | 1480bp | 15.7 | 28.6K | 42.1Mb |
| b3_15_4 | 1479bp | 1479bp | 15.7 | 38.1K | 56.1Mb |
| b3_18_1 | 1482bp | 1482bp | 15.7 | 25.5K | 37.7Mb |
| b3_18_2 | 1480bp | 1481bp | 15.7 | 21.1K | 31.1Mb |
| b3_18_3 | 1480bp | 1481bp | 15.7 | 25.3K | 37.3Mb |
| b3_18_4 | 1478bp | 1478bp | 15.7 | 31.2K | 45.9Mb |
| b3_22_1 | 1485bp | 1485bp | 15.7 | 27.6K | 40.8Mb |
| b3_22_2 | 1477bp | 1478bp | 15.7 | 30.6K | 44.9Mb |
| b3_22_3 | 1473bp | 1474bp | 15.8 | 22.3K | 32.8Mb |
| b3_22_4 | 1483bp | 1483bp | 15.7 | 12.5K | 18.5Mb |
| b3_25_1 | 1477bp | 1477bp | 15.7 | 26.3K | 38.7Mb |
| b3_25_2 | 1482bp | 1483bp | 15.8 | 27.8K | 41.1Mb |
| b3_25_3 | 1481bp | 1482bp | 15.7 | 30.2K | 44.5Mb |
| b3_25_4 | 1474bp | 1474bp | 15.8 | 24.5K | 36.0Mb |
| b3_29_1 | 1479bp | 1479bp | 15.8 | 25.0K | 36.9Mb |
| b3_29_2 | 1483bp | 1483bp | 15.7 | 27.6K | 40.8Mb |
| b3_29_3 | 1483bp | 1483bp | 15.8 | 40.3K | 59.5Mb |
| b3_29_4 | 1483bp | 1483bp | 15.7 | 19.8K | 29.3Mb |
| b3_32_2 | 1477bp | 1477bp | 15.7 | 17.6K | 25.9Mb |
| b3_32_3 | 1482bp | 1482bp | 15.8 | 21.9K | 32.3Mb |
| b3_32_4 | 1481bp | 1482bp | 15.8 | 18.8K | 27.8Mb |
| b3_36_1 | 1480bp | 1481bp | 15.8 | 19.6K | 28.9Mb |
| b3_36_2 | 1482bp | 1482bp | 15.8 | 24.1K | 35.6Mb |
| b3_36_3 | 1478bp | 1478bp | 15.7 | 61.2K | 90.1Mb |
| b3_36_4 | 1480bp | 1480bp | 15.7 | 25.6K | 37.7Mb |
NanoStat
Reports various statistics for long read dataset in FASTQ, BAM, or albacore sequencing summary format (supports NanoPack; NanoPlot, NanoComp).URL: https://github.com/wdecoster/nanostat; https://github.com/wdecoster/nanoplotDOI: 10.1093/bioinformatics/bty149
Programs are part of the NanoPack family for summarising results of sequencing on Oxford Nanopore methods (MinION, PromethION etc.)Summary Statistics (FASTQ)
Showing 97/97 rows and 5/7 columns.
| Sample Name | Median length | Mean length | Read N50 | Median Qual | Mean Qual | # Reads (K) | Total Bases (Mb) |
|---|---|---|---|---|---|---|---|
| b1_1_1 | 1494bp | 1486bp | 1494bp | 12.1 | 11.6 | 7.5K | 11.1Mb |
| b1_1_2 | 1496bp | 1484bp | 1497bp | 12.2 | 11.6 | 5.5K | 8.2Mb |
| b1_1_3 | 1486bp | 1475bp | 1487bp | 12.1 | 11.6 | 3.7K | 5.4Mb |
| b1_1_6 | 1494bp | 1488bp | 1494bp | 12.2 | 11.6 | 6.9K | 10.3Mb |
| b1_1_7 | 1482bp | 1470bp | 1483bp | 12.1 | 11.6 | 4.4K | 6.4Mb |
| b1_4_1 | 1487bp | 1481bp | 1487bp | 12.1 | 11.6 | 8.6K | 12.8Mb |
| b1_4_2 | 1482bp | 1474bp | 1482bp | 12.2 | 11.7 | 6.4K | 9.4Mb |
| b1_4_3 | 1478bp | 1474bp | 1478bp | 12.2 | 11.6 | 7.6K | 11.2Mb |
| b1_4_6 | 1478bp | 1465bp | 1479bp | 12.2 | 11.7 | 4.1K | 6.0Mb |
| b1_4_7 | 1491bp | 1481bp | 1492bp | 12.2 | 11.7 | 4.5K | 6.7Mb |
| b1_8_1 | 1497bp | 1485bp | 1498bp | 12.2 | 11.6 | 4.5K | 6.7Mb |
| b1_8_2 | 1473bp | 1454bp | 1474bp | 12.1 | 11.6 | 2.0K | 2.9Mb |
| b1_8_3 | 1477bp | 1466bp | 1478bp | 12.1 | 11.6 | 4.0K | 5.8Mb |
| b1_8_6 | 1487bp | 1479bp | 1488bp | 12.2 | 11.6 | 6.4K | 9.5Mb |
| b1_8_7 | 1487bp | 1476bp | 1488bp | 12.2 | 11.6 | 4.2K | 6.2Mb |
| b1_11_1 | 1501bp | 1490bp | 1502bp | 12.2 | 11.6 | 4.8K | 7.2Mb |
| b1_11_2 | 1495bp | 1477bp | 1496bp | 12.2 | 11.6 | 4.0K | 5.9Mb |
| b1_11_3 | 1491bp | 1484bp | 1491bp | 12.1 | 11.6 | 6.8K | 10.2Mb |
| b1_11_6 | 1500bp | 1491bp | 1501bp | 12.1 | 11.6 | 6.5K | 9.7Mb |
| b1_11_7 | 1496bp | 1477bp | 1498bp | 12.1 | 11.6 | 3.3K | 4.8Mb |
| b1_15_1 | 1497bp | 1490bp | 1498bp | 12.2 | 11.6 | 5.2K | 7.7Mb |
| b1_15_2 | 1477bp | 1468bp | 1478bp | 12.1 | 11.6 | 5.3K | 7.8Mb |
| b1_15_3 | 1493bp | 1486bp | 1494bp | 12.1 | 11.6 | 5.9K | 8.7Mb |
| b1_15_6 | 1493bp | 1483bp | 1493bp | 12.1 | 11.6 | 6.1K | 9.1Mb |
| b1_15_7 | 1476bp | 1470bp | 1476bp | 12.1 | 11.6 | 5.9K | 8.7Mb |
| b1_18_1 | 1498bp | 1490bp | 1499bp | 12.1 | 11.6 | 6.2K | 9.3Mb |
| b1_18_2 | 1477bp | 1468bp | 1478bp | 12.1 | 11.6 | 5.9K | 8.6Mb |
| b1_18_3 | 1482bp | 1476bp | 1483bp | 12.1 | 11.6 | 5.4K | 7.9Mb |
| b1_18_6 | 1491bp | 1483bp | 1492bp | 12.2 | 11.6 | 5.4K | 8.0Mb |
| b1_18_7 | 1474bp | 1462bp | 1475bp | 12.0 | 11.5 | 3.7K | 5.5Mb |
| b1_22_1 | 1503bp | 1490bp | 1504bp | 12.1 | 11.6 | 7.1K | 10.5Mb |
| b1_22_2 | 1469bp | 1453bp | 1470bp | 12.0 | 11.5 | 3.1K | 4.5Mb |
| b1_22_3 | 1484bp | 1478bp | 1485bp | 12.1 | 11.6 | 5.2K | 7.6Mb |
| b1_22_6 | 1499bp | 1488bp | 1500bp | 12.2 | 11.6 | 6.0K | 8.9Mb |
| b1_22_7 | 1482bp | 1475bp | 1483bp | 12.2 | 11.6 | 6.8K | 10.0Mb |
| b2_1_1 | 1481bp | 1476bp | 1482bp | 11.8 | 11.3 | 17.1K | 25.3Mb |
| b2_1_2 | 1460bp | 1454bp | 1461bp | 11.8 | 11.3 | 15.3K | 22.2Mb |
| b2_1_3 | 1470bp | 1466bp | 1471bp | 11.8 | 11.3 | 20.6K | 30.1Mb |
| b2_1_4 | 1476bp | 1471bp | 1477bp | 11.8 | 11.3 | 26.8K | 39.4Mb |
| b2_1_5 | 1472bp | 1465bp | 1473bp | 11.8 | 11.3 | 24.1K | 35.2Mb |
| b2_4_1 | 1473bp | 1468bp | 1473bp | 11.8 | 11.3 | 23.7K | 34.8Mb |
| b2_4_2 | 1474bp | 1468bp | 1474bp | 11.8 | 11.3 | 19.5K | 28.6Mb |
| b2_4_3 | 1475bp | 1470bp | 1475bp | 11.8 | 11.3 | 20.3K | 29.9Mb |
| b2_4_4 | 1470bp | 1464bp | 1471bp | 11.8 | 11.3 | 17.9K | 26.2Mb |
| b2_4_5 | 1484bp | 1480bp | 1485bp | 11.8 | 11.3 | 29.2K | 43.1Mb |
| b2_8_1 | 1482bp | 1476bp | 1483bp | 11.8 | 11.3 | 24.5K | 36.2Mb |
| b2_8_2 | 1483bp | 1475bp | 1484bp | 11.8 | 11.3 | 14.6K | 21.6Mb |
| b2_8_3 | 1488bp | 1477bp | 1488bp | 11.9 | 11.4 | 19.5K | 28.8Mb |
| b2_8_4 | 1484bp | 1478bp | 1485bp | 11.8 | 11.3 | 20.3K | 30.0Mb |
| b2_8_5 | 1478bp | 1469bp | 1479bp | 11.8 | 11.3 | 14.0K | 20.6Mb |
| b2_11_1 | 1467bp | 1461bp | 1468bp | 11.8 | 11.3 | 6.8K | 10.0Mb |
| b2_11_2 | 1476bp | 1472bp | 1477bp | 11.8 | 11.3 | 19.3K | 28.4Mb |
| b2_11_3 | 1477bp | 1466bp | 1477bp | 11.8 | 11.3 | 26.3K | 38.6Mb |
| b2_11_4 | 1477bp | 1470bp | 1477bp | 11.8 | 11.3 | 21.2K | 31.2Mb |
| b2_11_5 | 1474bp | 1469bp | 1475bp | 11.8 | 11.3 | 22.1K | 32.4Mb |
| b2_15_1 | 1471bp | 1464bp | 1472bp | 11.8 | 11.3 | 23.0K | 33.6Mb |
| b2_15_2 | 1464bp | 1458bp | 1465bp | 11.7 | 11.3 | 18.9K | 27.5Mb |
| b2_15_3 | 1461bp | 1453bp | 1462bp | 11.9 | 11.4 | 12.9K | 18.8Mb |
| b2_15_4 | 1476bp | 1470bp | 1477bp | 11.8 | 11.3 | 16.9K | 24.9Mb |
| b2_15_5 | 1475bp | 1469bp | 1475bp | 11.8 | 11.3 | 15.3K | 22.5Mb |
| b2_18_1 | 1471bp | 1463bp | 1472bp | 11.8 | 11.3 | 22.8K | 33.3Mb |
| b2_18_2 | 1471bp | 1464bp | 1472bp | 11.8 | 11.3 | 22.1K | 32.3Mb |
| b2_18_3 | 1466bp | 1461bp | 1467bp | 11.8 | 11.3 | 17.5K | 25.6Mb |
| b2_18_4 | 1474bp | 1467bp | 1474bp | 11.8 | 11.3 | 21.0K | 30.7Mb |
| b2_18_5 | 1463bp | 1456bp | 1463bp | 11.8 | 11.4 | 23.1K | 33.6Mb |
| b2_22_1 | 1475bp | 1459bp | 1476bp | 11.8 | 11.3 | 16.6K | 24.2Mb |
| b2_22_2 | 1473bp | 1467bp | 1474bp | 11.9 | 11.4 | 3.7K | 5.5Mb |
| b2_22_3 | 1465bp | 1461bp | 1466bp | 11.8 | 11.3 | 13.1K | 19.1Mb |
| b2_22_4 | 1473bp | 1457bp | 1474bp | 11.8 | 11.3 | 20.1K | 29.3Mb |
| b2_22_5 | 1475bp | 1471bp | 1475bp | 11.8 | 11.3 | 24.2K | 35.6Mb |
| b3_15_1 | 1477bp | 1470bp | 1478bp | 15.7 | 14.4 | 12.8K | 18.8Mb |
| b3_15_2 | 1483bp | 1476bp | 1483bp | 15.7 | 14.5 | 37.8K | 55.8Mb |
| b3_15_3 | 1480bp | 1474bp | 1480bp | 15.7 | 14.5 | 28.6K | 42.1Mb |
| b3_15_4 | 1479bp | 1473bp | 1479bp | 15.7 | 14.5 | 38.1K | 56.1Mb |
| b3_18_1 | 1482bp | 1476bp | 1482bp | 15.7 | 14.5 | 25.5K | 37.7Mb |
| b3_18_2 | 1480bp | 1475bp | 1481bp | 15.7 | 14.5 | 21.1K | 31.1Mb |
| b3_18_3 | 1480bp | 1474bp | 1481bp | 15.7 | 14.5 | 25.3K | 37.3Mb |
| b3_18_4 | 1478bp | 1472bp | 1478bp | 15.7 | 14.4 | 31.2K | 45.9Mb |
| b3_22_1 | 1485bp | 1479bp | 1485bp | 15.7 | 14.5 | 27.6K | 40.8Mb |
| b3_22_2 | 1477bp | 1468bp | 1478bp | 15.7 | 14.5 | 30.6K | 44.9Mb |
| b3_22_3 | 1473bp | 1469bp | 1474bp | 15.8 | 14.5 | 22.3K | 32.8Mb |
| b3_22_4 | 1483bp | 1477bp | 1483bp | 15.7 | 14.5 | 12.5K | 18.5Mb |
| b3_25_1 | 1477bp | 1471bp | 1477bp | 15.7 | 14.5 | 26.3K | 38.7Mb |
| b3_25_2 | 1482bp | 1477bp | 1483bp | 15.8 | 14.5 | 27.8K | 41.1Mb |
| b3_25_3 | 1481bp | 1474bp | 1482bp | 15.7 | 14.5 | 30.2K | 44.5Mb |
| b3_25_4 | 1474bp | 1470bp | 1474bp | 15.8 | 14.6 | 24.5K | 36.0Mb |
| b3_29_1 | 1479bp | 1474bp | 1479bp | 15.8 | 14.5 | 25.0K | 36.9Mb |
| b3_29_2 | 1483bp | 1478bp | 1483bp | 15.7 | 14.5 | 27.6K | 40.8Mb |
| b3_29_3 | 1483bp | 1477bp | 1483bp | 15.8 | 14.5 | 40.3K | 59.5Mb |
| b3_29_4 | 1483bp | 1480bp | 1483bp | 15.7 | 14.5 | 19.8K | 29.3Mb |
| b3_32_2 | 1477bp | 1471bp | 1477bp | 15.7 | 14.5 | 17.6K | 25.9Mb |
| b3_32_3 | 1482bp | 1475bp | 1482bp | 15.8 | 14.5 | 21.9K | 32.3Mb |
| b3_32_4 | 1481bp | 1477bp | 1482bp | 15.8 | 14.5 | 18.8K | 27.8Mb |
| b3_36_1 | 1480bp | 1475bp | 1481bp | 15.8 | 14.5 | 19.6K | 28.9Mb |
| b3_36_2 | 1482bp | 1478bp | 1482bp | 15.8 | 14.6 | 24.1K | 35.6Mb |
| b3_36_3 | 1478bp | 1472bp | 1478bp | 15.7 | 14.5 | 61.2K | 90.1Mb |
| b3_36_4 | 1480bp | 1472bp | 1480bp | 15.7 | 14.4 | 25.6K | 37.7Mb |
Reads by quality
Read counts categorised by read quality (Phred score).
Sequencing machines assign each generated read a quality score using the Phred scale. The phred score represents the liklelyhood that a given read contains errors. High quality reads have a high score.
